lidar_rendu/CLAUDE.md

CLAUDE.md

This file provides guidance to Claude Code (claude.ai/code) when working with code in this repository.

Project Overview

LiDAR archaeological processing pipeline that generates 17 terrain visualizations from LAZ/LAS point clouds. Runs in Docker with optional NVIDIA GPU acceleration (CuPy). Designed for French LiDAR HD data in Lambert 93 (EPSG:2154).

Commands

All commands run inside Docker. Use ./run.sh as the primary interface.

./run.sh -g                                    # Standard run with GPU
./run.sh -g -w 4                               # GPU + 4 parallel workers
./run.sh -g -r 0.2                             # High resolution (0.2m/px)
./run.sh --test                                 # Run unit tests
./run.sh -g --file LHD_FXX_1000_6882_PTS_LAMB93_IGN69.copc  # Single file
./run.sh --ground-classification pmf            # Force PMF ground classification
./run.sh -g --keep-tif                          # Keep intermediate TIFF files
./run.sh                                        # Print help (no args)

Direct Docker:

docker build -t lidar-lidar .
docker run --rm --gpus all -v $(pwd)/input:/data/input:ro -v $(pwd)/output:/data/output lidar-lidar

Architecture

Module responsibilities

• cli.py — argparse + logging setup. Entry point via python -m lidar_pipeline.
• pipeline.py — LidarArchaeoPipeline orchestrator. VIZ_STEPS registry maps names to generate functions. FilePrefixFilter for parallel logging. Creates SharedDEM once per file and passes it to all visualizations.
• dtm.py — PDAL ground classification (SMRF/PMF/CSF + auto-detection) and DTM generation via scipy binned_statistic_2d.
• visualizations.py — 15 generate_* functions + 2 IGN overlay lambdas. All take (dem_file, basename, vis_dir, resolution, shared=None) and return a TIF path or None. SharedDEM class pre-computes gradient, NaN mask, LRM to avoid redundant I/O and computation.
• gpu.py — CuPy/numpy abstraction: HAS_GPU, to_gpu(), to_cpu(), xp_gaussian_filter(), xp_uniform_filter(), xp_minimum_filter(), gpu_cleanup(). Falls back to CPU gracefully.
• ign.py — IGN WMTS tile download + overlay generation for orthophoto and topographic maps.
• rendering.py — COLORMAPS dict maps filename keywords to (cmap, title, legend, description). tif_to_png() converts TIF→WebP with legend/scale/north arrow. generate_pdf_report() creates A3 PDF.

SharedDEM optimization

SharedDEM pre-computes once per file:

• DEM data (single I/O read)
• NaN mask + filled DEM (single _fill_nans call, avoiding ~20 redundant calls)
• Gradient components (dy, dx, slope, aspect) shared by hillshade, slope, aspect, curvature
• LRM at 15m kernel (shared by lrm + anomalies)

_filter_nanaware_from_filled() applies filters on the pre-filled DEM, skipping the expensive _fill_nans interpolation.

Adding a visualization

Three places must be updated:

1. visualizations.py — add generate_X(dem_file, basename, vis_dir, resolution, shared=None) function
2. pipeline.py VIZ_STEPS — add ('name', generate_X) entry
3. rendering.py COLORMAPS — add entry keyed by the output filename keyword

Ground classification

Auto-detection in dtm.py detect_ground_method():

• Single-return ratio > 0.6 → PMF (urban terrain)
• Height std > 30m → CSF (complex/mountainous terrain)
• Default → SMRF (natural terrain)

Override with --ground-classification {auto,smrf,pmf,csf}.

NaN handling

DTM small gaps (< 1m from existing data) are filled using rasterio.fill.fillnodata. Large gaps remain as NaN. SharedDEM fills NaN once; _filter_nanaware_from_filled() applies filters on the pre-filled array and restores the NaN mask.

Flow accumulation

Uses priority-flood algorithm (Wang & Liu 2006) for sink filling, which is O(n log n) instead of iterative minimum_filter. D8 accumulation uses numba JIT; falls back to pure Python if numba unavailable.

Parallel processing

Uses ProcessPoolExecutor with 'spawn' start method (required for CUDA). Each worker gets its own temp directory (temp_{basename}). _process_file_standalone() configures its own logger with _file_filter for per-file log prefixes.

Key conventions

• Language: UI messages and comments in French. Code identifiers in English.
• Logging: Use logger = logging.getLogger("lidar"). Prefix per-file logs via _file_filter.basename.
• GPU pattern: arr_gpu = to_gpu(arr) → compute → result = to_cpu(arr_gpu) → gpu_cleanup() between visualizations.
• Output format: Visualizations saved as WebP. TIFF intermediates deleted after conversion unless --keep-tif. No COGs or viewer — only WebP + PDF report remain.
• Compression: TIF intermediates use deflate compression (faster than LZW for float32 data).
• Tests: Run only inside Docker via ./run.sh --test. Synthetic DEM fixture in tests/conftest.py.